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MIT Mined Bacteria for the Next CRISPR—and Found Hundreds of Potential New Tools

SingularityHub·Shelly Fan·about 1 month ago
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CRISPR is a breakthrough technology with humble origins. Scientists first discovered the powerful gene editor in bacteria that were using it as a weapon against invading viruses called phages. Phages can wipe out up to a quarter of a bacterial population in a day. Under assault, bacteria have evolved a hefty arsenal of defenses in a relentless arms race. These bacterial immune systems often chop up the DNA or RNA of invading viruses and are relatively easy to manufacture, making them alluring targets for scientists developing genetic engineering tools. CRISPR is just one example. There are many more. But traditional methods of searching for them are slow and labor-intensive, leaving most CRISPR-like proteins unexplored. Now, MIT scientists have released an AI called DefensePredictor that can root out new bacterial defense systems in five minutes, instead of weeks or months. As proof of concept, DefensePredictor churned through hundreds of thousands of proteins in multiple strains of Escherichia coli ( E.…

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