Does anyone know of an existing software, package, webtool, or suite that can do the full pipeline in one go?

1. Scan whole genome sequences for user-defined motifs or motifs from public databases
2. Integrate/enrich with expression sequencing results, including proper normalization
3. Run k-means clustering on the combined data

4. Generate heatmaps for visualization

5. Generate coexpression network plots using and export in cytoscape/related software formats.

I’m looking to benchmark our in-house pipeline against established tools for QC/QA purposes.

I know TB tools-2 can do few of the tasks but still, it's not fully automated. Open to both command-line, standalone app and web-based options. Anything you’ve used and liked.